Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kduI14-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (276 aa)    
Predicted Functional Partners:
kduD
kduD: 2-deoxy-D-gluconate 3-dehydrogenase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
 0.997
NPD11_525
Glycosyl Hydrolase Family 88 family protein.
 
  
 0.934
NPD11_534
[G] COG1904 Glucuronate isomerase.
 
   
 0.776
eda
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
  
 0.764
NPD11_521
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
  
  
 0.722
NPD11_524
Heparinase II/III-like family protein.
 
     0.638
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.611
phoU
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.564
uxuA
uxuA: mannonate dehydratase; [G] COG1312 D-mannonate dehydratase.
 
  
 0.560
AQM60478.1
Hypothetical protein; Glycosyl hydrolase family 65, N-terminal domain protein.
 
   
 0.441
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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