STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_531AAA domain family protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain. (898 aa)    
Predicted Functional Partners:
rpoN
rpoN_sigma: RNA polymerase sigma-54 factor; [K] COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog.
 
 
 
 0.937
AQM59773.1
EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component domain protein; [G] COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB.
  
  
 0.639
NPD11_529
[G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA.
  
  
 0.639
NPD11_566
pspA/IM30 family protein; [KT] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
   
 
 0.571
NPD11_267
AAA domain family protein; [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains.
 
   
0.569
lacE
lac_pts_IIC: PTS system, lactose-specific IIC component; [G] COG1455 Phosphotransferase system cellobiose-specific component IIC.
 
   
 0.547
AQM60108.1
Hypothetical protein; Bacterial purine repressor, N-terminal family protein; [K] COG3711 Transcriptional antiterminator.
 
   
 0.527
AQM59486.1
PRD domain protein; [K] COG3711 Transcriptional antiterminator.
 
   
 0.487
fruA
fruA: PTS system, fructose subfamily, IIA component domain protein; [G] COG1299 Phosphotransferase system, fructose-specific IIC component.
     
 0.485
licT
[K] COG3711 Transcriptional antiterminator.
  
   
 0.484
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.