STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_532Hypothetical protein; Polysaccharide lyase family 8, C-terminal beta-sandwich domain protein. (1101 aa)    
Predicted Functional Partners:
NPD11_524
Heparinase II/III-like family protein.
 
     0.547
NPD11_525
Glycosyl Hydrolase Family 88 family protein.
 
   
 0.546
eda-2
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
   
 0.483
AQM60209.1
Fructosamine kinase family protein.
  
     0.477
NPD11_531
AAA domain family protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
       0.476
AQM60684.1
Heparinase II/III-like family protein.
  
     0.473
AQM60257.1
Conserved hypothetical protein; [G] COG1626 Neutral trehalase.
  
     0.454
NPD11_534
[G] COG1904 Glucuronate isomerase.
     
 0.414
AQM61083.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
 
  
 0.409
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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