Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_537Short chain dehydrogenase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (283 aa)    
Predicted Functional Partners:
uxuA
uxuA: mannonate dehydratase; [G] COG1312 D-mannonate dehydratase.
 
  
 0.949
NPD11_534
[G] COG1904 Glucuronate isomerase.
 
  
 0.936
eda-2
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
  
 0.884
gph
Gph: sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein; [G] COG2211 Na+/melibiose symporter and related transporters.
 
   
 0.788
NPD11_541
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
 
 
 
 0.691
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
 
 
 0.528
NPD11_539
Glycosyl hydrolases 2 family protein; [G] COG3250 Beta-galactosidase/beta-glucuronidase.
 
   
 0.516
NPD11_538
Bacterial regulatory s, gntR family protein; [K] COG1802 Transcriptional regulators.
     
 0.512
fabD
fabD: malonyl CoA-acyl carrier protein transacylase; [I] COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
 
 0.496
NPD11_543
Haloacid dehalogenase-like hydrolase family protein.
 
  
 0.466
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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