STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_539Glycosyl hydrolases 2 family protein; [G] COG3250 Beta-galactosidase/beta-glucuronidase. (600 aa)    
Predicted Functional Partners:
gph
Gph: sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein; [G] COG2211 Na+/melibiose symporter and related transporters.
 
  
 0.801
NPD11_540
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein; [G] COG1472 Beta-glucosidase-related glycosidases.
 
   
 0.780
uxuA
uxuA: mannonate dehydratase; [G] COG1312 D-mannonate dehydratase.
 
  
 0.771
NPD11_537
Short chain dehydrogenase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
 0.743
NPD11_534
[G] COG1904 Glucuronate isomerase.
 
  
 0.720
NPD11_541
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
 
  
 0.695
NPD11_542
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein; [G] COG1472 Beta-glucosidase-related glycosidases.
 
   
 0.677
AQM59594.1
MFS/sugar transport family protein; [G] COG2211 Na+/melibiose symporter and related transporters.
 
  
 0.631
NPD11_538
Bacterial regulatory s, gntR family protein; [K] COG1802 Transcriptional regulators.
 
   
 0.617
NPD11_543
Haloacid dehalogenase-like hydrolase family protein.
 
     0.601
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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