STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_550Conserved hypothetical protein; [S] COG2832 Uncharacterized protein conserved in bacteria. (132 aa)    
Predicted Functional Partners:
NPD11_552
ABC transporter family protein; [CO] COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
     0.940
NPD11_551
Putative ABC transporter ATP-binding protein HI_0664; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
     0.926
NPD11_549
Nitrous oxide-stimulated promoter family protein.
 
     0.924
NPD11_548
Iron Transport-associated domain protein.
       0.763
NPD11_553
Conserved hypothetical protein; [S] COG2832 Uncharacterized protein conserved in bacteria.
 
    
0.539
topB
DNA topoisomerase III family protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus [...]
       0.512
NPD11_554
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
       0.418
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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