Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_554Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. (303 aa)    
Predicted Functional Partners:
NPD11_993
TPR repeat family protein.
   
 
 0.771
NPD11_553
Conserved hypothetical protein; [S] COG2832 Uncharacterized protein conserved in bacteria.
       0.682
AQM58933.1
Hypothetical protein.
   
 0.649
htpG
Hsp90 family protein; Molecular chaperone. Has ATPase activity.
  
 0.641
recD2
phoH-like family protein; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 
 0.639
NPD11_551
Putative ABC transporter ATP-binding protein HI_0664; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 
 0.611
AQM60237.1
[M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 
 0.604
AQM60506.1
[M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 
 0.604
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.603
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.552
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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