STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_558Bacterial regulatory, arsR family protein; [K] COG0640 Predicted transcriptional regulators. (93 aa)    
Predicted Functional Partners:
gshAB
Glutamate--cysteine ligase/glutathione synthase; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily.
     
 0.774
NPD11_560
matE: MATE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump.
       0.773
AQM59270.1
Bacterial regulatory, arsR family protein; [K] COG0640 Predicted transcriptional regulators.
  
   
 0.741
NPD11_557
Hypothetical protein.
       0.701
NPD11_561
Hypothetical protein.
       0.553
AQM59827.1
Sodium Bile acid symporter family protein; [P] COG0798 Arsenite efflux pump ACR3 and related permeases.
 
  
 0.458
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
 
  
 0.443
NPD11_556
Putative zinc-binding domain protein.
       0.412
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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