Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_56Radical SAM superfamily protein; [O] COG1180 Pyruvate-formate lyase-activating enzyme. (303 aa)    
Predicted Functional Partners:
NPD11_55
Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein; [S] COG3885 Uncharacterized conserved protein.
 
     0.958
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
     
 0.548
cutC
Choline trimethylamine-lyase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
  
  
 0.520
pflB
Pyr_form_ly_1: formate acetyltransferase; [C] COG1882 Pyruvate-formate lyase.
  
  
 0.520
NPD11_54
Hypothetical protein.
       0.481
fprA2
Flavodoxin family protein; [C] COG0426 Uncharacterized flavoproteins.
 
  
 0.413
AQM59472.1
B12 binding domain protein; [C] COG1032 Fe-S oxidoreductase.
  
     0.409
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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