STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_566pspA/IM30 family protein; [KT] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription. (216 aa)    
Predicted Functional Partners:
AQM61172.1
pspC domain protein; [KT] COG1983 Putative stress-responsive transcriptional regulator.
  
 
 0.955
NPD11_564
Hypothetical protein.
       0.577
AQM61142.1
Lin1832 protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
   
 
 0.571
AQM59932.1
Sigma-54 interaction domain protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
   
 
 0.571
NPD11_531
AAA domain family protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
   
 
 0.571
NPD11_565
Hypothetical protein.
       0.547
AQM60003.1
[T] COG0642 Signal transduction histidine kinase.
    
 
 0.492
NPD11_665
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
    
 
 0.492
AQM60604.1
Hypothetical protein.
  
  
 0.464
cinA
pncC_: amidohydrolase, PncC family domain protein; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
       0.426
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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