Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_601hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. (293 aa)    
Predicted Functional Partners:
AQM60981.1
Hypothetical protein; 8-oxoguanine DNA glycosylase, N-terminal domain protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.
  
  
 
0.908
nfo
Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
   
 
 0.755
NPD11_603
Conserved phage family protein.
 
     0.657
NPD11_602
Hypothetical protein; dnaB-like helicase N terminal domain protein; [L] COG0305 Replicative DNA helicase.
       0.634
NPD11_128
Hypothetical protein.
  
     0.609
AQM58700.1
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
  
     0.563
xth
exoDNase_III: exodeoxyribonuclease III; [L] COG0708 Exonuclease III.
   
 0.450
NPD11_107
Hypothetical protein.
  
     0.447
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.445
pyrB
Asp_carb_tr: aspartate carbamoyltransferase; [F] COG0540 Aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
     0.445
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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