STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_606Putative permease family protein; [R] COG0701 Predicted permeases. (301 aa)    
Predicted Functional Partners:
NPD11_605
Conserved hypothetical protein; [S] COG3689 Predicted membrane protein.
 
  
 0.977
NPD11_607
cobW/HypB/UreG, nucleotide-binding domain protein; [R] COG0523 Putative GTPases (G3E family).
    0.929
NPD11_608
cobW/HypB/UreG, nucleotide-binding domain protein; [R] COG0523 Putative GTPases (G3E family).
 
    0.866
NPD11_604
Hypothetical protein.
       0.486
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.472
AQM59463.1
Multicopper oxidase family protein.
  
  
 0.444
NPD11_609
Carbohydrate binding domain protein.
       0.437
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.