STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_612Ferric reductase like transmembrane component family protein; [S] COG2717 Predicted membrane protein. (220 aa)    
Predicted Functional Partners:
plc
Phospholipase C.
  
     0.729
AQM61124.1
Voltage-dependent anion channel family protein; [P] COG1275 Tellurite resistance protein and related permeases.
  
     0.722
dltD
LTA_DltD: D-alanyl-lipoteichoic acid biosynthesis protein DltD; [M] COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein).
  
     0.655
NPD11_889
Hypothetical protein.
  
     0.649
NPD11_891
Hypothetical protein.
  
     0.629
NPD11_624
hisDCase_pyru: histidine decarboxylase, pyruvoyl type.
 
     0.608
NPD11_617
ABC transporter family protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
 
    0.497
NPD11_614
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
    0.483
NPD11_613
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
       0.474
dltC
D-alanine--poly(phosphoribitol) ligase, subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall.
  
     0.472
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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