STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_617ABC transporter family protein; [V] COG1131 ABC-type multidrug transport system, ATPase component. (248 aa)    
Predicted Functional Partners:
NPD11_615
ABC-2 transporter family protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.885
NPD11_616
ABC-2 transporter family protein.
 
     0.874
NPD11_613
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
     
 0.757
NPD11_114
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
    
0.749
NPD11_614
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
    0.738
AQM60400.1
ABC-2 transporter family protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
 0.588
AQM59488.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
0.525
NPD11_612
Ferric reductase like transmembrane component family protein; [S] COG2717 Predicted membrane protein.
 
    0.497
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
    0.485
NPD11_618
Glycosyl hydrolase 1 family protein; [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; Belongs to the glycosyl hydrolase 1 family.
     
 0.475
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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