STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_624hisDCase_pyru: histidine decarboxylase, pyruvoyl type. (320 aa)    
Predicted Functional Partners:
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
     
  0.900
aaxC
Arginine/agmatine antiporter; [E] COG0531 Amino acid transporters.
 
     0.858
plc
Phospholipase C.
  
     0.684
NPD11_612
Ferric reductase like transmembrane component family protein; [S] COG2717 Predicted membrane protein.
 
     0.608
AQM61124.1
Voltage-dependent anion channel family protein; [P] COG1275 Tellurite resistance protein and related permeases.
  
     0.586
AQM59340.1
Hypothetical protein.
  
     0.521
AQM59693.1
Hypothetical protein.
  
     0.515
AQM61401.1
CGGC domain protein; [S] COG5561 Predicted metal-binding protein.
  
     0.478
NPD11_621
Tetratricopeptide repeat family protein.
 
     0.414
NPD11_889
Hypothetical protein.
  
     0.408
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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