STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_646[M] COG3409 Putative peptidoglycan-binding domain-containing protein. (133 aa)    
Predicted Functional Partners:
AQM59252.1
[N] COG5492 Bacterial surface proteins containing Ig-like domains.
  
  
 0.646
AQM60298.1
PPIC-type PPIASE domain protein; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
  
  
 0.646
entD
mannosyl-glycoendo-beta-N-acetylglucosamidase domain protein, possible enterotoxin; [G] COG4193 Beta- N-acetylglucosaminidase.
 
  
 0.604
NPD11_416
Phage tail tape measure, family, core region domain protein.
  
  
 0.546
AQM60609.1
nlpC/P60 family protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
  
 0.532
yhiM
Inner membrane protein yhiM.
       0.523
trxB
TRX_reduct: thioredoxin-disulfide reductase; [O] COG0492 Thioredoxin reductase.
     
 0.487
AQM59567.1
N-acetylmuramoyl-L-alanine amidase family protein.
  
  
 0.454
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.443
AQM58934.1
lysM domain protein; [M] COG1388 FOG: LysM repeat.
  
  
 0.437
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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