STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_655Pentapeptide repeats family protein; [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component. (433 aa)    
Predicted Functional Partners:
AQM61069.1
C_GCAxxG_C_C: C_GCAxxG_C_C family protein.
  
     0.755
NPD11_490
Hypothetical protein.
  
     0.754
NPD11_656
Acetyltransferase family protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.648
AQM59432.1
F5/8 type C domain protein.
  
    0.595
AQM60044.1
Hypothetical protein.
  
     0.564
NPD11_353
Conserved hypothetical protein; [S] COG4086 Predicted secreted protein.
  
    0.547
NPD11_653
Polymer-forming cytoskeletal family protein; [M] COG1664 Integral membrane protein CcmA involved in cell shape determination.
 
     0.515
NPD11_563
[T] COG0642 Signal transduction histidine kinase.
  
  
 0.502
AQM61249.1
Conserved hypothetical protein; [R] COG1988 Predicted membrane-bound metal-dependent hydrolases.
  
     0.497
AQM60489.1
Conserved hypothetical protein; [S] COG1289 Predicted membrane protein.
 
     0.485
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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