STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_666NADPH-dependent FMN reductase family protein; [R] COG0655 Multimeric flavodoxin WrbA. (241 aa)    
Predicted Functional Partners:
NPD11_667
Bacterial regulatory s, lacI family protein; [K] COG1609 Transcriptional regulators.
       0.701
NPD11_836
NADPH-dependent FMN reductase family protein; [R] COG0655 Multimeric flavodoxin WrbA.
  
     0.625
AQM59118.1
4Fe-4S binding domain protein; [C] COG0778 Nitroreductase.
 
  
 0.531
AQM61392.1
3D domain protein; [S] COG3584 Uncharacterized protein conserved in bacteria.
   
  
 0.487
rbsB
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
       0.468
NPD11_879
TM nitroreductase family protein; [C] COG0778 Nitroreductase.
 
  
 0.446
NPD11_669
[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
       0.444
AQM61412.1
prkA AAA domain protein; [T] COG2766 Putative Ser protein kinase.
   
    0.439
NPD11_665
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
       0.431
msrB
methionine-R-sulfoxide reductase; [O] COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.
  
    0.417
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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