Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_678Helix-turn-helix family protein; [K] COG1609 Transcriptional regulators. (326 aa)    
Predicted Functional Partners:
NPD11_676
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.755
NPD11_677
Sucrose-6-phosphate hydrolase family protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.755
NPD11_679
PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component; [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
 
  
 0.727
ptsH
Phosphocarrier protein HPr; [G] COG1925 Phosphotransferase system, HPr-related proteins.
   
 
 0.584
NPD11_267
AAA domain family protein; [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains.
   
 
 0.523
AQM59169.1
UTRA domain protein; [K] COG2188 Transcriptional regulators.
  
   
 0.451
NPD11_741
UTRA domain protein; [K] COG2188 Transcriptional regulators.
  
   
 0.441
fruA
fruA: PTS system, fructose subfamily, IIA component domain protein; [G] COG1299 Phosphotransferase system, fructose-specific IIC component.
     
 0.408
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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