Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_68Pseudouridine synthase family protein; [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (227 aa)    
Predicted Functional Partners:
NPD11_69
[L] COG1041 Predicted DNA modification methylase.
       0.701
NPD11_67
N-6 DNA Methylase family protein; [V] COG0286 Type I restriction-modification system methyltransferase subunit.
       0.655
NPD11_70
3mg: DNA-3-methyladenine glycosylase family protein; [L] COG2094 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family.
       0.620
cmk
Cmk: cytidylate kinase; [F] COG0283 Cytidylate kinase.
 
  
 0.602
engA
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.591
xth
exoDNase_III: exodeoxyribonuclease III; [L] COG0708 Exonuclease III.
  
    0.557
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.507
hydF
GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF; [R] COG1160 Predicted GTPases.
  
  
 0.462
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.416
NPD11_65
Putative histamine N-methyltransferase.
       0.413
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.