STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_688Radical SAM superfamily protein; [L] COG1533 DNA repair photolyase. (297 aa)    
Predicted Functional Partners:
NPD11_687
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
       0.541
NPD11_545
[S] COG4422 Bacteriophage protein gp37.
 
     0.536
NPD11_686
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
       0.517
NPD11_689
Type I phosphodiesterase / nucleotide pyrophosphatase family protein; [R] COG1524 Uncharacterized proteins of the AP superfamily.
     
 0.439
AQM59329.1
Mor transcription activator family protein.
  
     0.421
NPD11_690
small_GTP: small GTP-binding domain protein; [J] COG0480 Translation elongation factors (GTPases).
       0.407
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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