Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_693grpB family protein; [S] COG2320 Uncharacterized conserved protein. (179 aa)    
Predicted Functional Partners:
NPD11_692
Conserved hypothetical protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
    0.632
NPD11_890
Acetyltransferase domain protein; [R] COG5628 Predicted acetyltransferase.
 
     0.532
rnhB
Ribonuclease HII family protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.462
AQM60338.1
Acetyltransferase domain protein; [R] COG3153 Predicted acetyltransferase.
 
     0.433
NPD11_691
Hypothetical protein.
       0.412
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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