Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_697GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain. (518 aa)    
Predicted Functional Partners:
AQM61144.1
[T] COG2200 FOG: EAL domain.
 
 
 0.903
AQM59676.1
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
 0.889
AQM60001.1
[T] COG2200 FOG: EAL domain.
 
  
 0.880
AQM59076.1
HDOD domain protein; [T] COG2206 HD-GYP domain.
  
 
 0.775
NPD11_701
GGDEF: diguanylate cyclase domain protein; [T] COG2206 HD-GYP domain.
 
 
0.590
AQM61203.1
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
0.570
NPD11_399
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
0.569
NPD11_696
Chloramphenicol phosphotransferase-like family protein.
       0.501
NPD11_698
Hypothetical protein.
       0.496
AQM59238.1
[R] COG0457 FOG: TPR repeat.
  
  
 0.462
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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