STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_705degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria. (283 aa)    
Predicted Functional Partners:
NPD11_194
yloV: DAK2 domain fusion YloV family protein; [R] COG1461 Predicted kinase related to dihydroxyacetone kinase.
 
 0.983
NPD11_193
Asp23 family protein; [S] COG1302 Uncharacterized protein conserved in bacteria.
 
    0.579
NPD11_704
Conserved hypothetical protein; [S] COG4905 Predicted membrane protein.
  
    0.528
NPD11_706
Hypothetical protein.
       0.468
NPD11_707
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
       0.426
NPD11_708
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
       0.426
NPD11_709
Pilus assembly, PilO family protein.
       0.426
NPD11_710
Fimbrial assembly family protein.
       0.426
NPD11_711
Type IV pilus assembly PilM, family protein; [NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
       0.426
NPD11_701
GGDEF: diguanylate cyclase domain protein; [T] COG2206 HD-GYP domain.
 
    0.424
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.