STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_715Type II secretion system (T2SS), F family protein; [NU] COG1459 Type II secretory pathway, component PulF. (401 aa)    
Predicted Functional Partners:
NPD11_716
Hypothetical protein; Type II secretion system (T2SS), E, N-terminal domain protein; [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.979
AQM59035.1
Hypothetical protein; Type II secretion system (T2SS), E, N-terminal domain protein; [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.920
NPD11_385
Type II/IV secretion system family protein; [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.920
NPD11_712
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
  
 0.917
AQM61199.1
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
  
 0.859
NPD11_714
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.842
NPD11_466
pilT_fam: twitching motility family protein; [NU] COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
  
 0.835
NPD11_713
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.808
NPD11_711
Type IV pilus assembly PilM, family protein; [NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
 
 
 
 0.767
AQM59404.1
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG4969 Tfp pilus assembly protein, major pilin PilA.
 
  
 0.653
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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