STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_719hlyD secretion family protein; [M] COG0845 Membrane-fusion protein. (227 aa)    
Predicted Functional Partners:
NPD11_721
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.997
NPD11_720
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.973
AQM59008.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.665
AQM60724.1
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.638
AQM59389.1
Hypothetical protein.
  
 
 0.638
AQM60656.1
Putative membrane protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.638
NPD11_568
Putative membrane protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.638
NPD11_687
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.638
AQM60372.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.620
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
 
 
   0.577
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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