Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_741UTRA domain protein; [K] COG2188 Transcriptional regulators. (234 aa)    
Predicted Functional Partners:
AQM58766.1
UTRA domain protein; [K] COG2188 Transcriptional regulators.
  
     0.772
AQM59174.1
Bacterial regulatory s, gntR family protein; [K] COG2186 Transcriptional regulators.
  
  
 0.738
NPD11_679
PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component; [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
 
  
 0.576
AQM59760.1
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
  
 0.545
NPD11_619
PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component family protein; [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
 
  
 0.484
NPD11_742
PTS system, lactose/cellobiose IIC component family protein; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
  
    0.469
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase; [G] COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.447
NPD11_678
Helix-turn-helix family protein; [K] COG1609 Transcriptional regulators.
  
   
 0.441
AQM61408.1
Cupin domain protein.
  
    0.412
NPD11_834
Cupin domain protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
    0.412
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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