STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_745Glycosyl hydrolase 85 family protein; [G] COG4724 Endo-beta-N-acetylglucosaminidase D. (949 aa)    
Predicted Functional Partners:
AQM59791.1
Hypothetical protein; Glycosyl hydrolases family 38 C-terminal domain protein; [G] COG0383 Alpha-mannosidase.
 
  
 0.837
AQM61393.1
Hypothetical protein.
 
     0.812
AQM60214.1
Glycosyl hydrolase family 20, catalytic domain protein; [G] COG3525 N-acetyl-beta-hexosaminidase.
 
   
 0.806
AQM58922.1
Helix-turn-helix domain protein; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
 
    0.775
AQM60737.1
Bacterial extracellular solute-binding family protein; [G] COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.772
AQM60230.1
Hypothetical protein.
 
     0.732
AQM59792.1
Binding--dependent transport system inner membrane component family protein; [G] COG0395 ABC-type sugar transport system, permease component.
 
     0.706
AQM61321.1
Binding--dependent transport system inner membrane component family protein; [G] COG4209 ABC-type polysaccharide transport system, permease component.
 
     0.693
AQM59021.1
Hypothetical protein; Glycosyl hydrolases family 38 C-terminal domain protein; [G] COG0383 Alpha-mannosidase.
 
  
 0.686
AQM58829.1
HAMP domain protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
     0.651
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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