STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_760Transglycosylase SLT domain protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (166 aa)    
Predicted Functional Partners:
NPD11_758
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
    0.500
AQM59238.1
[R] COG0457 FOG: TPR repeat.
  
  
 0.492
NPD11_759
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.487
lonC
spore_lon_C: ATP-dependent protease, Lon family; [O] COG1067 Predicted ATP-dependent protease.
  
     0.454
NPD11_761
Spore coat associated JA family protein.
       0.428
AQM59750.1
Calcineurin-like phosphoesterase family protein; [R] COG1768 Predicted phosphohydrolase.
  
     0.410
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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