Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_778D-alanyl-D-alanine carboxypeptidase family protein. (646 aa)    
Predicted Functional Partners:
AQM61049.1
mazG-like family protein.
  
     0.625
ytxC
spo_ytxC: putative sporulation protein YtxC.
  
     0.598
AQM59053.1
Hypothetical protein.
  
     0.594
AQM58934.1
lysM domain protein; [M] COG1388 FOG: LysM repeat.
  
     0.562
NPD11_341
Oxidoreductase FAD-binding domain protein; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
     0.532
AQM60009.1
Putative amidase domain protein.
  
     0.508
NPD11_777
Hypothetical protein.
       0.508
yyaC
spore_YyaC: putative sporulation protein YyaC.
  
    0.498
AQM59984.1
Hypothetical protein.
  
     0.498
NPD11_107
Hypothetical protein.
  
     0.479
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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