STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhaLdha_L_ycgS: dihydroxyacetone kinase, L subunit; [G] COG2376 Dihydroxyacetone kinase. (210 aa)    
Predicted Functional Partners:
dhaK
dhaK1: dihydroxyacetone kinase, DhaK subunit; [G] COG2376 Dihydroxyacetone kinase.
 
 0.999
NPD11_780
Dha_pts: dihydroxyacetone kinase, phosphotransfer subunit; [S] COG3412 Uncharacterized protein conserved in bacteria.
 
 
 0.995
NPD11_779
FAD dependent oxidoreductase family protein; [R] COG0579 Predicted dehydrogenase.
    
  0.929
gpsA
Ketopantoate reductase PanE/ApbA family protein; [C] COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.817
AQM59756.1
FAD dependent oxidoreductase family protein; [R] COG0579 Predicted dehydrogenase.
    
  0.800
tlp
SASP_tlp: small, acid-soluble spore protein tlp; Belongs to the Tlp family.
       0.442
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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