STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tlpSASP_tlp: small, acid-soluble spore protein tlp; Belongs to the Tlp family. (77 aa)    
Predicted Functional Partners:
AQM59786.1
spore_ger_x_C: germination, Ger(x)C family protein.
  
     0.569
NPD11_591
Hypothetical protein.
  
     0.566
spmB
[S] COG0700 Uncharacterized membrane protein.
      
 0.519
NPD11_784
Hypothetical protein.
       0.504
dhaK
dhaK1: dihydroxyacetone kinase, DhaK subunit; [G] COG2376 Dihydroxyacetone kinase.
       0.486
spoIIM
spo_II_M: stage II sporulation protein M; [S] COG1300 Uncharacterized membrane protein.
  
   
 0.474
AQM60726.1
Putative membrane protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
    0.472
NPD11_892
LD-carboxypeptidase family protein; [V] COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF.
  
     0.469
AQM60400.1
ABC-2 transporter family protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
    0.447
spmA
Nucleoside recognition family protein; [R] COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis.
      
 0.446
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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