Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_800Hypothetical protein. (433 aa)    
Predicted Functional Partners:
AQM61145.1
Competence ComEA helix-hairpin-helix repeat region domain protein; [L] COG1555 DNA uptake protein and related DNA-binding proteins.
   
  
 0.598
dprA
dprA: DNA protecting protein DprA; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
  
 0.565
cinA
pncC_: amidohydrolase, PncC family domain protein; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
      
 0.532
AQM61199.1
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
   
  
 0.516
NPD11_712
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
   
  
 0.516
AQM61259.1
Hypothetical protein.
   
  
 0.463
NPD11_799
HIT domain protein; [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.
       0.452
NPD11_798
DEAD/DEAH box helicase family protein; [KL] COG1061 DNA or RNA helicases of superfamily II.
       0.430
NPD11_797
Putative phosphoribosyl-ATP pyrophosphohydrolase; [S] COG4997 Uncharacterized conserved protein.
       0.429
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      
 0.409
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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