STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_804Nitrite and sulphite reductase 4Fe-4S domain protein; [C] COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits. (236 aa)    
Predicted Functional Partners:
nox
trkA-N domain protein; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
      0.828
cobA
cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase; [H] COG0007 Uroporphyrinogen-III methylase.
 
     0.713
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
  
 0.673
AQM59408.1
Nitrite and sulphite reductase 4Fe-4S domain protein; [P] COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
   
 0.669
NPD11_805
Conserved hypothetical protein; [S] COG2364 Predicted membrane protein.
       0.497
NPD11_806
Hypothetical protein; Iron dependent repressor, N-terminal DNA binding domain protein; [K] COG1846 Transcriptional regulators.
       0.497
NPD11_803
Hypothetical protein.
       0.478
AQM59356.1
Molybdopterin oxidoreductase family protein; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.463
asrA-2
sulfite_red_A: sulfite reductase, subunit A; [C] COG1145 Ferredoxin.
 
  
 0.431
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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