STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_806Hypothetical protein; Iron dependent repressor, N-terminal DNA binding domain protein; [K] COG1846 Transcriptional regulators. (137 aa)    
Predicted Functional Partners:
NPD11_805
Conserved hypothetical protein; [S] COG2364 Predicted membrane protein.
       0.781
AQM60322.1
marR family protein; [K] COG1846 Transcriptional regulators.
  
     0.724
AQM61137.1
Binding--dependent transport system inner membrane component family protein; [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 
  
 0.525
NPD11_804
Nitrite and sulphite reductase 4Fe-4S domain protein; [C] COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits.
       0.497
NPD11_807
DEAD/DEAH box helicase family protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
       0.485
NPD11_809
marR family protein; [K] COG1846 Transcriptional regulators.
 
     0.463
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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