STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_809marR family protein; [K] COG1846 Transcriptional regulators. (145 aa)    
Predicted Functional Partners:
NPD11_810
matE: MATE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump.
 
  
 0.862
AQM60565.1
Winged helix DNA-binding domain protein; [K] COG1846 Transcriptional regulators.
  
     0.663
NPD11_806
Hypothetical protein; Iron dependent repressor, N-terminal DNA binding domain protein; [K] COG1846 Transcriptional regulators.
 
     0.463
AQM61137.1
Binding--dependent transport system inner membrane component family protein; [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
  
  
 0.462
NPD11_808
L,D-transpeptidase catalytic domain protein; [S] COG1376 Uncharacterized protein conserved in bacteria.
       0.452
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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