Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_820Hypothetical protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain. (216 aa)    
Predicted Functional Partners:
NPD11_818
Accessory gene regulator B family protein.
    
 0.907
NPD11_642
quorum_AgrD: cyclic lactone autoinducer peptide family protein.
     
  0.900
AQM60891.1
Bacterial cellulose synthase subunit.
  
   
 0.609
NPD11_643
Accessory gene regulator B family protein; [OTK] COG4512 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide.
 
   
 0.555
AQM59265.1
Conserved hypothetical protein; [S] COG5298 Uncharacterized protein conserved in bacteria.
  
     0.552
AQM60237.1
[M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
   
 0.464
AQM61423.1
[T] COG2199 FOG: GGDEF domain.
  
     0.455
AQM60214.1
Glycosyl hydrolase family 20, catalytic domain protein; [G] COG3525 N-acetyl-beta-hexosaminidase.
   
    0.445
plc
Phospholipase C.
  
     0.422
AQM60431.1
choice_anch_A: choice-of-anchor A domain protein; [M] COG4932 Predicted outer membrane protein.
  
     0.404
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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