STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_834Cupin domain protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (135 aa)    
Predicted Functional Partners:
NPD11_833
[S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
   
 0.983
NPD11_836
NADPH-dependent FMN reductase family protein; [R] COG0655 Multimeric flavodoxin WrbA.
 
    0.667
NPD11_835
merR HTH regulatory family protein; [K] COG0789 Predicted transcriptional regulators.
  
  
 0.639
NPD11_857
[R] COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
     0.541
NPD11_852
Aldo/keto reductase family protein; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
     0.461
cobB-2
Sir2 family protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.420
NPD11_832
HAD-SF-IIB: HAD hydrolase, IIB family protein; [R] COG0561 Predicted hydrolases of the HAD superfamily.
  
    0.410
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.400
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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