STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_837Bacterial extracellular solute-binding family protein; [E] COG0687 Spermidine/putrescine-binding periplasmic protein. (351 aa)    
Predicted Functional Partners:
AQM58671.1
Binding--dependent transport system inner membrane component family protein; [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.998
AQM61189.1
Binding--dependent transport system inner membrane component family protein; [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.985
potA
Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.979
AQM59244.1
ABC transporter family protein; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
  
 0.768
NPD11_838
[I] COG3884 Acyl-ACP thioesterase.
       0.489
NPD11_836
NADPH-dependent FMN reductase family protein; [R] COG0655 Multimeric flavodoxin WrbA.
       0.476
NPD11_835
merR HTH regulatory family protein; [K] COG0789 Predicted transcriptional regulators.
       0.414
AQM60197.1
Helix-turn-helix family protein; [K] COG1396 Predicted transcriptional regulators.
 
   
 0.410
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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