Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_852Aldo/keto reductase family protein; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases). (334 aa)    
Predicted Functional Partners:
NPD11_857
[R] COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
0.695
NPD11_853
merR regulatory family protein; [K] COG0789 Predicted transcriptional regulators.
  
    0.496
NPD11_854
NUDIX domain protein; [L] COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding.
 
     0.480
AQM60783.1
MIP: MIP channel s family protein; [G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.473
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
  
 0.473
AQM60575.1
MIP: MIP channel s family protein; [G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.473
NPD11_834
Cupin domain protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.472
stp
[T] COG0631 Serine/threonine protein phosphatase.
  
 
   0.449
AQM59760.1
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.427
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.418
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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