STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_856Sugar (and other) transporter family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily. (446 aa)    
Predicted Functional Partners:
NPD11_857
[R] COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
    0.552
NPD11_855
merR regulatory family protein; [K] COG0789 Predicted transcriptional regulators.
  
    0.523
AQM59899.1
Bacterial extracellular solute-binding family protein; [P] COG1840 ABC-type Fe3+ transport system, periplasmic component.
  
  
 0.427
AQM59012.1
phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein; [P] COG1840 ABC-type Fe3+ transport system, periplasmic component.
  
  
 0.427
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.