STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_862ABC transporter family protein; [V] COG1131 ABC-type multidrug transport system, ATPase component. (296 aa)    
Predicted Functional Partners:
NPD11_861
ABC-2 transporter family protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
  
 0.967
NPD11_863
Hypothetical protein.
       0.773
AQM60726.1
Putative membrane protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.597
ecfA-2
ABC transporter family protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.537
NPD11_686
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
0.537
AQM61047.1
ABC transporter family protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
     
0.478
NPD11_864
Hypothetical protein.
       0.476
NPD11_567
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
0.451
ecfA
ABC transporter family protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.434
NPD11_8
Putative amino-acid import ATP-binding protein YxeO; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.
 
    
0.425
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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