STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_889Hypothetical protein. (170 aa)    
Predicted Functional Partners:
plc
Phospholipase C.
  
     0.734
AQM61124.1
Voltage-dependent anion channel family protein; [P] COG1275 Tellurite resistance protein and related permeases.
  
     0.718
NPD11_891
Hypothetical protein.
  
     0.655
NPD11_612
Ferric reductase like transmembrane component family protein; [S] COG2717 Predicted membrane protein.
  
     0.649
NPD11_339
Hypothetical protein.
 
     0.625
AQM59693.1
Hypothetical protein.
  
     0.539
NPD11_633
Pentapeptide repeats family protein; [S] COG1357 Uncharacterized low-complexity proteins.
  
     0.522
NPD11_888
Acetyltransferase family protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.511
dltD
LTA_DltD: D-alanyl-lipoteichoic acid biosynthesis protein DltD; [M] COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein).
  
     0.497
AQM60298.1
PPIC-type PPIASE domain protein; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
  
     0.491
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.