STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_895Conserved hypothetical protein; [S] COG3738 Uncharacterized protein conserved in bacteria. (230 aa)    
Predicted Functional Partners:
NPD11_894
Putative membrane protein.
       0.773
NPD11_892
LD-carboxypeptidase family protein; [V] COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF.
 
     0.519
NPD11_893
LD-carboxypeptidase family protein; [V] COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF.
       0.448
AQM60254.1
Type I phosphodiesterase / nucleotide pyrophosphatase family protein; [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
  
     0.435
NPD11_896
Lipoyltrans: lipoyltransferase and lipoate-ligase family protein; [H] COG0095 Lipoate-protein ligase A.
       0.422
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
       0.422
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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