Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_901ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. (1113 aa)    
Predicted Functional Partners:
NPD11_902
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.980
AQM58757.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
  
 
 0.838
AQM61083.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
  
 
 0.838
AQM59350.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
  
 
 0.838
NPD11_903
Bacterial regulatory s, tetR family protein; [K] COG1309 Transcriptional regulator.
 
  
 0.672
scpA
scpA/B family protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.636
AQM59488.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.606
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 
 0.559
AQM58639.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.548
AQM59008.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.548
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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