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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_928yjdL_sub1_fam: amino acid/peptide transporter family protein; [E] COG3104 Dipeptide/tripeptide permease. (458 aa)    
Predicted Functional Partners:
AQM59642.1
Peptidase M28 family protein; [R] COG2234 Predicted aminopeptidases.
 
 
 0.564
AQM59236.1
Amino acid permease family protein; [E] COG0531 Amino acid transporters.
  
 
 0.501
NPD11_927
Amino acid permease family protein; [E] COG0531 Amino acid transporters.
  
 
 0.491
AQM58968.1
[C] COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family.
   
    0.477
bdhA
NADH-dependent butanol dehydrogenase A; [C] COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family.
   
    0.477
tdc-2
tyr_de_CO2_Ent: tyrosine decarboxylase; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
  
  
 0.440
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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