STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_934Flavodoxin; Flav_short: flavodoxin; [C] COG0716 Flavodoxins. (140 aa)    
Predicted Functional Partners:
NPD11_932
Hypothetical protein.
 
   
 0.904
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
     
 0.773
AQM58966.1
2-oxoacid:acceptor oxidoreductase, alpha subunit; OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
     
 0.564
NPD11_936
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein; [E] COG0765 ABC-type amino acid transport system, permease component.
  
    0.519
NPD11_935
ABC transporter family protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.
     
 0.498
NPD11_937
Bacterial extracellular solute-binding s, 3 family protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
    0.494
NPD11_933
Flavodoxin; Flav_short: flavodoxin; [C] COG0716 Flavodoxins.
 
    
0.475
AQM59628.1
cheC-like family protein; [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation.
    
   0.446
AQM59919.1
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
  
 0.441
AQM59118.1
4Fe-4S binding domain protein; [C] COG0778 Nitroreductase.
  
  
 0.437
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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