STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_940Hypothetical protein; nfeD-like C-terminal, partner-binding family protein; [OU] COG1585 Membrane protein implicated in regulation of membrane protease activity. (144 aa)    
Predicted Functional Partners:
cobS
Cobalamin-5-phosphate synthase family protein; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.975
NPD11_939
SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
  
 0.947
AQM58775.1
Helix-turn-helix family protein; [R] COG0457 FOG: TPR repeat.
 
    0.742
AQM60070.1
Tetratricopeptide repeat family protein; [K] COG1396 Predicted transcriptional regulators.
 
    0.704
AQM60186.1
dnaD_dom: DnaD domain protein; [L] COG3935 Putative primosome component and related proteins.
  
     0.670
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.660
AQM61139.1
NAD(P)-binding family protein; [H] COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
  
     0.603
NPD11_310
Acetyltransferase family protein; [R] COG0456 Acetyltransferases.
 
     0.602
AQM58923.1
ATP synthase B/B' CF family protein.
  
     0.551
AQM61013.1
Hypothetical protein.
  
     0.514
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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