STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_949ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components. (570 aa)    
Predicted Functional Partners:
NPD11_952
Bacterial extracellular solute-binding s, 3 family protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
  
 0.803
NPD11_950
ABC transporter family protein; [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
      
0.797
NPD11_951
Binding--dependent transport system inner membrane component family protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.797
NPD11_115
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
     
0.701
NPD11_758
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 
 
0.569
NPD11_947
Pyridine nucleotide-disulfide oxidoreductase family protein; [O] COG0492 Thioredoxin reductase.
       0.562
trxA
Thioredoxin: thioredoxin; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
  
  
 0.545
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.541
NPD11_953
ATPase_P-type: HAD ATPase, P-type, IC family protein; [P] COG0474 Cation transport ATPase.
  
 
 0.530
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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