STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_950ABC transporter family protein; [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component. (223 aa)    
Predicted Functional Partners:
NPD11_951
Binding--dependent transport system inner membrane component family protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 0.961
NPD11_952
Bacterial extracellular solute-binding s, 3 family protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.931
NPD11_949
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
      
0.797
NPD11_915
Binding--dependent transport system inner membrane component family protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.771
AQM59637.1
Binding--dependent transport system inner membrane component family protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.719
trxA
Thioredoxin: thioredoxin; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
 
   0.629
NPD11_917
Bacterial extracellular solute-binding s, 3 family protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.611
NPD11_947
Pyridine nucleotide-disulfide oxidoreductase family protein; [O] COG0492 Thioredoxin reductase.
 
     0.532
AQM61384.1
NMT1-like family protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
  
 0.524
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.502
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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